IL_6IP8_083

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAC*GAA

Length

8 nucleotides

Bulged bases

6IP8|1|1A|A|2428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP8_083 not in the Motif Atlas

Geometric match to IL_7A0S_047

Geometric discrepancy: 0.2612

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

6IP8|1|1A|U|2415
6IP8|1|1A|G|2416
6IP8|1|1A|A|2417
6IP8|1|1A|A|2418
6IP8|1|1A|C|2419
*
6IP8|1|1A|G|2427
6IP8|1|1A|A|2428
6IP8|1|1A|A|2429

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2J

60S ribosomal protein L17

Chain 2L

60S ribosomal protein L19

Chain 2f

60S ribosomal protein L39