IL_6IP8_087

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP8_087 not in the Motif Atlas

Geometric match to IL_7RQB_075

Geometric discrepancy: 0.1915

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6IP8|1|1A|C|2589
6IP8|1|1A|G|2590
6IP8|1|1A|A|2591
6IP8|1|1A|U|2592
6IP8|1|1A|C|2593
*
6IP8|1|1A|G|2752
6IP8|1|1A|G|2753
6IP8|1|1A|G|2754
6IP8|1|1A|A|2755
6IP8|1|1A|G|2756

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1D

60S ribosomal protein L8

Chain 2T

60S ribosomal protein L27

Chain 2a

60S ribosomal protein L34