IL_6IP8_114
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGAGGC*GCUC
- Length
- 11 nucleotides
- Bulged bases
- 6IP8|1|1A|G|4084, 6IP8|1|1A|G|4086, 6IP8|1|1A|G|4087, 6IP8|1|1A|C|4162, 6IP8|1|1A|U|4163
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP8_114 not in the Motif Atlas
- Homologous match to IL_8P9A_324
- Geometric discrepancy: 0.4366
- The information below is about IL_8P9A_324
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52092.1
- Basepair signature
- cWW-cWS-cWW
- Number of instances in this motif group
- 4
Unit IDs
6IP8|1|1A|G|4082
6IP8|1|1A|U|4083
6IP8|1|1A|G|4084
6IP8|1|1A|A|4085
6IP8|1|1A|G|4086
6IP8|1|1A|G|4087
6IP8|1|1A|C|4088
*
6IP8|1|1A|G|4161
6IP8|1|1A|C|4162
6IP8|1|1A|U|4163
6IP8|1|1A|C|4164
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 1D
- 60S ribosomal protein L8
- Chain 2B
- 60S ribosomal protein L7a
- Chain 2R
- 60S ribosomal protein L23a
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