IL_8P9A_324

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AUGAAGC*GGGU

Length

11 nucleotides

Bulged bases

8P9A|1|AR|G|2522, 8P9A|1|AR|G|2585, 8P9A|1|AR|G|2586

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00555.1

Basepair signature

cWW-cWS-cWW-L-R

Number of instances in this motif group

2

Unit IDs

8P9A|1|AR|A|2520
8P9A|1|AR|U|2521
8P9A|1|AR|G|2522
8P9A|1|AR|A|2523
8P9A|1|AR|A|2524
8P9A|1|AR|G|2525
8P9A|1|AR|C|2526
*
8P9A|1|AR|G|2584
8P9A|1|AR|G|2585
8P9A|1|AR|G|2586
8P9A|1|AR|U|2587

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain AT

5.8S ribosomal RNA; 5.8S rRNA

Chain CD

60S ribosomal protein L2-A

Chain CJ

60S ribosomal protein L8-A

Chain CZ

60S ribosomal protein L25