IL_6IP8_125

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

6IP8|1|1A|G|4522, 6IP8|1|1A|A|4523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP8_125 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.1407

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6IP8|1|1A|C|4456
6IP8|1|1A|U|4457
6IP8|1|1A|C|4458
*
6IP8|1|1A|G|4520
6IP8|1|1A|U|4521
6IP8|1|1A|G|4522
6IP8|1|1A|A|4523
6IP8|1|1A|G|4524

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1E

60S ribosomal protein L3

Chain 2P

60S ribosomal protein L23

Chain zx

nascent peptide