IL_6IP8_139
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAUUAU*AGAAUCC
- Length
- 13 nucleotides
- Bulged bases
- 6IP8|1|1A|A|4708
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP8_139 not in the Motif Atlas
- Geometric match to IL_4W90_002
- Geometric discrepancy: 0.3641
- The information below is about IL_4W90_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74322.2
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
6IP8|1|1A|G|4680
6IP8|1|1A|A|4681
6IP8|1|1A|U|4682
6IP8|1|1A|U|4683
6IP8|1|1A|A|4684
6IP8|1|1A|U|4685
*
6IP8|1|1A|A|4705
6IP8|1|1A|G|4706
6IP8|1|1A|A|4707
6IP8|1|1A|A|4708
6IP8|1|1A|U|4709
6IP8|1|1A|C|4710
6IP8|1|1A|C|4711
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2C
- 60S ribosomal protein L9
- Chain 2I
- 60S ribosomal protein L13a
- Chain 2g
- Ubiquitin-60S ribosomal protein L40
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