IL_6IP8_184
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGGGCAAGUCU*AGCU
- Length
- 15 nucleotides
- Bulged bases
- 6IP8|1|2m|U|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP8_184 not in the Motif Atlas
- Geometric match to IL_7LYF_001
- Geometric discrepancy: 0.3803
- The information below is about IL_7LYF_001
- Detailed Annotation
- Isolated cWH basepair with non-canonical cWW
- Broad Annotation
- Isolated cWH basepair with non-canonical cWW
- Motif group
- IL_71194.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
6IP8|1|2m|A|599
6IP8|1|2m|G|600
6IP8|1|2m|G|601
6IP8|1|2m|G|602
6IP8|1|2m|C|603
6IP8|1|2m|A|604
6IP8|1|2m|A|605
6IP8|1|2m|G|606
6IP8|1|2m|U|607
6IP8|1|2m|C|608
6IP8|1|2m|U|609
*
6IP8|1|2m|A|634
6IP8|1|2m|G|635
6IP8|1|2m|C|636
6IP8|1|2m|U|637
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 2p
- 40S ribosomal protein S3
- Chain 3B
- 40S ribosomal protein S23
- Chain 3G
- 40S ribosomal protein S2
- Chain 3I
- 40S ribosomal protein S9
- Chain 3Q
- 40S ribosomal protein S30
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