IL_6IP8_190

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP8_190 not in the Motif Atlas

Homologous match to IL_4V88_423

Geometric discrepancy: 0.1535

The information below is about IL_4V88_423

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

6IP8|1|2m|A|802
6IP8|1|2m|C|803
*
6IP8|1|2m|G|860
6IP8|1|2m|A|861
6IP8|1|2m|A|862
6IP8|1|2m|U|863

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2s

40S ribosomal protein S7

Chain 2v

40S ribosomal protein S11

Chain 3B

40S ribosomal protein S23

Chain 3M

40S ribosomal protein S15a