IL_6IP8_198

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGCC*GAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP8_198 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3323

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6IP8|1|2m|C|927
6IP8|1|2m|G|928
6IP8|1|2m|G|929
6IP8|1|2m|C|930
6IP8|1|2m|C|931
*
6IP8|1|2m|G|1010
6IP8|1|2m|A|1011
6IP8|1|2m|A|1012
6IP8|1|2m|U|1013
6IP8|1|2m|G|1014

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2o

40S ribosomal protein S3a

Chain 3K

40S ribosomal protein S13

Chain 3P

40S ribosomal protein S27