IL_6IP8_201

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

6IP8|1|2m|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP8_201 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.2

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6IP8|1|2m|G|952
6IP8|1|2m|C|953
6IP8|1|2m|U|954
6IP8|1|2m|A|955
6IP8|1|2m|G|956
*
6IP8|1|2m|C|967
6IP8|1|2m|U|968
6IP8|1|2m|U|969
6IP8|1|2m|G|970
6IP8|1|2m|G|971
6IP8|1|2m|A|972
6IP8|1|2m|C|973
6IP8|1|2m|C|974

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 2o

40S ribosomal protein S3a

Chain 3L

40S ribosomal protein S14