IL_6IP8_205
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGAU*GCAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP8_205 not in the Motif Atlas
- Geometric match to IL_4V88_438
- Geometric discrepancy: 0.2215
- The information below is about IL_4V88_438
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
6IP8|1|2m|C|1098
6IP8|1|2m|G|1099
6IP8|1|2m|A|1100
6IP8|1|2m|U|1101
*
6IP8|1|2m|G|1131
6IP8|1|2m|C|1132
6IP8|1|2m|A|1133
6IP8|1|2m|G|1134
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 2n
- 40S ribosomal protein SA
- Chain 2o
- 40S ribosomal protein S3a
- Chain 2y
- 40S ribosomal protein S17
- Chain 3C
- 40S ribosomal protein S26
- Chain 3K
- 40S ribosomal protein S13
- Chain 3P
- 40S ribosomal protein S27
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