IL_6IP8_229
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP8_229 not in the Motif Atlas
- Homologous match to IL_4V88_464
- Geometric discrepancy: 0.2151
- The information below is about IL_4V88_464
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.1
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6IP8|1|2m|G|1702
6IP8|1|2m|C|1703
6IP8|1|2m|C|1704
6IP8|1|2m|C|1705
*
6IP8|1|2m|G|1829
6IP8|1|2m|U|1830
6IP8|1|2m|A|1831
6IP8|1|2m|A|1832
6IP8|1|2m|C|1833
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2h
- 60S ribosomal protein L41
- Chain zv
- mRNA
- Chain zw
- Eukaryotic peptide chain release factor subunit 1
- Chain zy
- Transfer RNA; tRNA
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