IL_6IP8_271
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGGGGGC*GCCAAG
- Length
- 13 nucleotides
- Bulged bases
- 6IP8|1|2m|G|933
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP8_271 not in the Motif Atlas
- Geometric match to IL_6CZR_369
- Geometric discrepancy: 0.2797
- The information below is about IL_6CZR_369
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_71294.1
- Basepair signature
- cWW-cWW-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6IP8|1|2m|C|931
6IP8|1|2m|G|932
6IP8|1|2m|G|933
6IP8|1|2m|G|934
6IP8|1|2m|G|935
6IP8|1|2m|G|936
6IP8|1|2m|C|937
*
6IP8|1|2m|G|1005
6IP8|1|2m|C|1006
6IP8|1|2m|C|1007
6IP8|1|2m|A|1008
6IP8|1|2m|A|1009
6IP8|1|2m|G|1010
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 2W
- 60S ribosomal protein L30
- Chain 2j
- 60S ribosomal protein L37a
- Chain 2o
- 40S ribosomal protein S3a
- Chain 3C
- 40S ribosomal protein S26
- Chain 3K
- 40S ribosomal protein S13
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