IL_6IP8_283
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CCCU*ACGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP8_283 not in the Motif Atlas
- Homologous match to IL_8C3A_479
- Geometric discrepancy: 0.4881
- The information below is about IL_8C3A_479
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_54697.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 51
Unit IDs
6IP8|1|2m|C|1738
6IP8|1|2m|C|1739
6IP8|1|2m|C|1740
6IP8|1|2m|U|1741
*
6IP8|1|2m|A|1793
6IP8|1|2m|C|1794
6IP8|1|2m|G|1795
6IP8|1|2m|G|1796
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2Q
- 60S ribosomal protein L24
- Chain 2t
- 40S ribosomal protein S8
- Chain 3H
- 40S ribosomal protein S6
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