IL_6IP8_285

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCCCGG*UC

Length

8 nucleotides

Bulged bases

6IP8|1|1A|C|501, 6IP8|1|1A|C|502, 6IP8|1|1A|C|503, 6IP8|1|1A|G|504

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6IP8_285 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.2989

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

6IP8|1|1A|G|500
6IP8|1|1A|C|501
6IP8|1|1A|C|502
6IP8|1|1A|C|503
6IP8|1|1A|G|504
6IP8|1|1A|G|505
*
6IP8|1|1A|U|653
6IP8|1|1A|C|654

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1F

60S ribosomal protein L4

Chain 2K

60S ribosomal protein L18