IL_6IP8_289
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6IP8_289 not in the Motif Atlas
- Homologous match to IL_8CRE_426
- Geometric discrepancy: 0.1202
- The information below is about IL_8CRE_426
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.1
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
6IP8|1|2m|C|676
6IP8|1|2m|G|677
6IP8|1|2m|U|678
6IP8|1|2m|A|679
6IP8|1|2m|G|680
*
6IP8|1|2m|U|1025
6IP8|1|2m|C|1026
6IP8|1|2m|A|1027
6IP8|1|2m|A|1028
6IP8|1|2m|G|1029
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2v
- 40S ribosomal protein S11
- Chain 3B
- 40S ribosomal protein S23
- Chain 3K
- 40S ribosomal protein S13
- Chain 3M
- 40S ribosomal protein S15a
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