IL_6J6N_008
3D structure
- PDB id
- 6J6N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstrom
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- CA*UUAG
- Length
- 6 nucleotides
- Bulged bases
- 6J6N|1|L|A|25
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6J6N_008 not in the Motif Atlas
- Geometric match to IL_3IGI_013
- Geometric discrepancy: 0.3971
- The information below is about IL_3IGI_013
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_44609.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 24
Unit IDs
6J6N|1|E|C|58
6J6N|1|E|A|59
*
6J6N|1|L|U|23
6J6N|1|L|U|24
6J6N|1|L|A|25
6J6N|1|L|G|26
Current chains
- Chain E
- U6 snRNA
- Chain L
- U2 snRNA
Nearby chains
- Chain A
- Pre-mRNA-splicing factor 8
- Chain B
- UBC4 pre-mRNA
- Chain P
- Pre-mRNA-processing protein 45
- Chain c
- Pre-mRNA-splicing factor CEF1
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