IL_6J6N_016

3D structure

PDB id

6J6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstrom

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

AUUU*AUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6J6N_016 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.1784

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6J6N|1|B|A|62
6J6N|1|B|U|63
6J6N|1|B|U|64
6J6N|1|B|U|65
*
6J6N|1|L|A|39
6J6N|1|L|U|40
6J6N|1|L|C|41
6J6N|1|L|U|42

Current chains

Chain B

UBC4 pre-mRNA

Chain L

U2 snRNA

Nearby chains

Chain A

Pre-mRNA-splicing factor 8