IL_6KC7_002

3D structure

PDB id

6KC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nme1Cas9 in complex with sgRNA and target DNA (ATATGATT PAM) in seed-base paring state

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCUU*ACCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6KC7_002 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.152

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

6KC7|1|B|C|35
6KC7|1|B|C|36
6KC7|1|B|U|37
6KC7|1|B|U|38
*
6KC7|1|B|A|51
6KC7|1|B|C|52
6KC7|1|B|C|53
6KC7|1|B|G|54

Current chains

Chain B

sgRNA

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9