IL_6KE6_050

3D structure

PDB id

6KE6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

6KE6|1|SA|U|313, 6KE6|1|SA|C|351

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6KE6_050 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.2789

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6KE6|1|SA|U|311
6KE6|1|SA|A|312
6KE6|1|SA|U|313
6KE6|1|SA|C|314
6KE6|1|SA|A|315
6KE6|1|SA|A|316
*
6KE6|1|SA|U|348
6KE6|1|SA|U|349
6KE6|1|SA|U|350
6KE6|1|SA|C|351
6KE6|1|SA|A|352
6KE6|1|SA|A|353
6KE6|1|SA|C|354
6KE6|1|SA|G|355

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RC

KRR1 small subunit processome component

Chain SJ

40S ribosomal protein S8-A

Chain SM

40S ribosomal protein S11-A