IL_6LKQ_012

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6LKQ|1|s|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LKQ_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1664

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

6LKQ|1|s|G|147
6LKQ|1|s|G|148
6LKQ|1|s|A|149
6LKQ|1|s|U|150
6LKQ|1|s|A|151
6LKQ|1|s|A|152
6LKQ|1|s|C|153
*
6LKQ|1|s|G|168
6LKQ|1|s|C|169
6LKQ|1|s|U|170
6LKQ|1|s|A|171
6LKQ|1|s|A|172
6LKQ|1|s|U|173
6LKQ|1|s|A|174
6LKQ|1|s|C|175

Current chains

Chain s

16S ribosomal RNA

Nearby chains

Chain S

30S ribosomal protein S20