IL_6LKQ_023

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LKQ_023 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.2685

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6LKQ|1|s|G|450
6LKQ|1|s|A|451
6LKQ|1|s|A|452
6LKQ|1|s|G|453
6LKQ|1|s|G|454
6LKQ|1|s|G|455
*
6LKQ|1|s|C|477
6LKQ|1|s|A|478
6LKQ|1|s|U|479
6LKQ|1|s|U|480
6LKQ|1|s|G|481
6LKQ|1|s|A|482
6LKQ|1|s|C|483

Current chains

Chain s

16S ribosomal RNA

Nearby chains

Chain O

30S ribosomal protein S16

Chain v

Peptide chain release factor 3