IL_6LKQ_026

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

6LKQ|1|s|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LKQ_026 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.1059

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

6LKQ|1|s|C|569
6LKQ|1|s|G|570
6LKQ|1|s|U|571
6LKQ|1|s|A|572
6LKQ|1|s|A|573
6LKQ|1|s|A|574
6LKQ|1|s|G|575
*
6LKQ|1|s|C|880
6LKQ|1|s|G|881

Current chains

Chain s

16S ribosomal RNA

Nearby chains

Chain G

30S ribosomal protein S8

Chain K

30S ribosomal protein S12

Chain P

30S ribosomal protein S17