IL_6LKQ_044

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

6LKQ|1|s|C|1200, 6LKQ|1|s|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LKQ_044 not in the Motif Atlas

Homologous match to IL_5J7L_048

Geometric discrepancy: 0.1525

The information below is about IL_5J7L_048

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

6LKQ|1|s|G|1057
6LKQ|1|s|G|1058
*
6LKQ|1|s|U|1199
6LKQ|1|s|C|1200
6LKQ|1|s|A|1201
6LKQ|1|s|U|1202
6LKQ|1|s|C|1203

Current chains

Chain s

16S ribosomal RNA

Nearby chains

Chain B

30S ribosomal protein S3

Chain I

30S ribosomal protein S10

Chain M

30S ribosomal protein S14