IL_6LKQ_055
3D structure
- PDB id
- 6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LKQ_055 not in the Motif Atlas
- Geometric match to IL_4V88_464
- Geometric discrepancy: 0.0943
- The information below is about IL_4V88_464
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.1
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6LKQ|1|s|G|1401
6LKQ|1|s|C|1402
6LKQ|1|s|C|1403
6LKQ|1|s|C|1404
*
6LKQ|1|s|G|1497
6LKQ|1|s|U|1498
6LKQ|1|s|A|1499
6LKQ|1|s|A|1500
6LKQ|1|s|C|1501
Current chains
- Chain s
- 16S ribosomal RNA
Nearby chains
- Chain t
- Large subunit ribosomal RNA; LSU rRNA
- Chain w
- messenger RNA
- Chain y
- Viomycin
Coloring options: