IL_6LKQ_057

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LKQ_057 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.2185

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6LKQ|1|s|C|1407
6LKQ|1|s|A|1408
6LKQ|1|s|C|1409
*
6LKQ|1|s|G|1491
6LKQ|1|s|A|1492
6LKQ|1|s|A|1493
6LKQ|1|s|G|1494

Current chains

Chain s

16S ribosomal RNA

Nearby chains

Chain AA

Viomycin

Chain BA

Viomycin

Chain K

30S ribosomal protein S12

Chain t

Large subunit ribosomal RNA; LSU rRNA

Chain w

messenger RNA

Chain y

Viomycin

Chain z

Viomycin