IL_6LKQ_078

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6LKQ|1|t|G|801, 6LKQ|1|t|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LKQ_078 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.0824

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6LKQ|1|t|G|674
6LKQ|1|t|A|675
6LKQ|1|t|A|676
6LKQ|1|t|A|677
6LKQ|1|t|C|678
*
6LKQ|1|t|G|799
6LKQ|1|t|A|800
6LKQ|1|t|G|801
6LKQ|1|t|A|802
6LKQ|1|t|U|803
6LKQ|1|t|A|804
6LKQ|1|t|G|805
6LKQ|1|t|C|806

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L15

Chain W

50S ribosomal protein L4