IL_6LKQ_089

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LKQ_089 not in the Motif Atlas

Homologous match to IL_5J7L_272

Geometric discrepancy: 0.1133

The information below is about IL_5J7L_272

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_26222.2

Basepair signature

cWW-cWS-cSH-tWH-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

6LKQ|1|t|G|864
6LKQ|1|t|C|865
6LKQ|1|t|A|866
6LKQ|1|t|C|867
6LKQ|1|t|U|868
*
6LKQ|1|t|A|909
6LKQ|1|t|A|910
6LKQ|1|t|A|911
6LKQ|1|t|C|912

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L16

Chain e

50S ribosomal protein L27

Chain u

5S ribosomal RNA; 5S rRNA