IL_6LKQ_103

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

6LKQ|1|t|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LKQ_103 not in the Motif Atlas

Homologous match to IL_5J7L_286

Geometric discrepancy: 0.0904

The information below is about IL_5J7L_286

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

6LKQ|1|t|C|1196
6LKQ|1|t|G|1197
6LKQ|1|t|U|1198
*
6LKQ|1|t|A|1247
6LKQ|1|t|G|1248
6LKQ|1|t|U|1249
6LKQ|1|t|G|1250

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L15

Chain 8

50S ribosomal protein L20

Chain W

50S ribosomal protein L4