IL_6LKQ_105

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6LKQ|1|t|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LKQ_105 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0778

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6LKQ|1|t|C|1208
6LKQ|1|t|U|1209
6LKQ|1|t|G|1210
6LKQ|1|t|C|1211
6LKQ|1|t|G|1212
6LKQ|1|t|A|1213
6LKQ|1|t|A|1214
6LKQ|1|t|G|1215
*
6LKQ|1|t|U|1234
6LKQ|1|t|G|1235
6LKQ|1|t|G|1236
6LKQ|1|t|A|1237
6LKQ|1|t|G|1238

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain 8

50S ribosomal protein L20