IL_6LKQ_108

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LKQ_108 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.0981

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

6LKQ|1|t|C|1319
6LKQ|1|t|C|1320
6LKQ|1|t|A|1321
6LKQ|1|t|A|1322
6LKQ|1|t|C|1323
*
6LKQ|1|t|G|1331
6LKQ|1|t|G|1332
6LKQ|1|t|G|1333

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L22