IL_6LKQ_117

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LKQ_117 not in the Motif Atlas

Homologous match to IL_5J7L_300

Geometric discrepancy: 0.1299

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6LKQ|1|t|U|1474
6LKQ|1|t|G|1475
6LKQ|1|t|U|1476
6LKQ|1|t|A|1477
6LKQ|1|t|G|1478
*
6LKQ|1|t|U|1513
6LKQ|1|t|G|1514
6LKQ|1|t|A|1515
6LKQ|1|t|G|1516
6LKQ|1|t|G|1517

Current chains

Chain t

23S ribosomal RNA

Nearby chains