IL_6LKQ_120

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAG*UGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LKQ_120 not in the Motif Atlas

Homologous match to IL_5J7L_303

Geometric discrepancy: 0.0973

The information below is about IL_5J7L_303

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

6LKQ|1|t|C|1526
6LKQ|1|t|G|1527
6LKQ|1|t|A|1528
6LKQ|1|t|G|1529
*
6LKQ|1|t|U|1542
6LKQ|1|t|G|1543
6LKQ|1|t|A|1544
6LKQ|1|t|A|1545
6LKQ|1|t|G|1546

Current chains

Chain t

23S ribosomal RNA

Nearby chains