IL_6LKQ_127

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAGG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LKQ_127 not in the Motif Atlas

Homologous match to IL_5J7L_310

Geometric discrepancy: 0.158

The information below is about IL_5J7L_310

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

6LKQ|1|t|U|1720
6LKQ|1|t|G|1721
6LKQ|1|t|A|1722
6LKQ|1|t|G|1723
6LKQ|1|t|G|1724
*
6LKQ|1|t|U|1736
6LKQ|1|t|G|1737
6LKQ|1|t|G|1738
6LKQ|1|t|A|1739
6LKQ|1|t|G|1740

Current chains

Chain t

23S ribosomal RNA

Nearby chains