3D structure

PDB id
6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CUAGUAC*GGACCG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6LKQ_157 not in the Motif Atlas
Geometric match to IL_5J7L_346
Geometric discrepancy: 0.1144
The information below is about IL_5J7L_346
Detailed Annotation
Sarcin-Ricin target in LSU H95; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_16458.4
Basepair signature
cWW-L-R-L-R-cSH-tWH-tHS-cWW
Number of instances in this motif group
5

Unit IDs

6LKQ|1|t|C|2652
6LKQ|1|t|U|2653
6LKQ|1|t|A|2654
6LKQ|1|t|G|2655
6LKQ|1|t|U|2656
6LKQ|1|t|A|2657
6LKQ|1|t|C|2658
*
6LKQ|1|t|G|2663
6LKQ|1|t|G|2664
6LKQ|1|t|A|2665
6LKQ|1|t|C|2666
6LKQ|1|t|C|2667
6LKQ|1|t|G|2668

Current chains

Chain t
23S ribosomal RNA

Nearby chains

Chain Y
50S ribosomal protein L6
Chain v
Peptide chain release factor 3

Coloring options:


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