IL_6LKQ_169

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

ACCCC*GAACU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LKQ_169 not in the Motif Atlas

Geometric match to IL_5J7L_358

Geometric discrepancy: 0.1496

The information below is about IL_5J7L_358

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.11

Basepair signature

cWW-cSH-cWS-L-tSW-R-R-cWW

Number of instances in this motif group

9

Unit IDs

6LKQ|1|u|A|34
6LKQ|1|u|C|35
6LKQ|1|u|C|36
6LKQ|1|u|C|37
6LKQ|1|u|C|38
*
6LKQ|1|u|G|44
6LKQ|1|u|A|45
6LKQ|1|u|A|46
6LKQ|1|u|C|47
6LKQ|1|u|U|48

Current chains

Chain u

5S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L18

Chain X

50S ribosomal protein L5

Chain t

Large subunit ribosomal RNA; LSU rRNA