IL_6LKQ_169
3D structure
- PDB id
- 6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- ACCCC*GAACU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LKQ_169 not in the Motif Atlas
- Geometric match to IL_5J7L_358
- Geometric discrepancy: 0.1496
- The information below is about IL_5J7L_358
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.11
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 9
Unit IDs
6LKQ|1|u|A|34
6LKQ|1|u|C|35
6LKQ|1|u|C|36
6LKQ|1|u|C|37
6LKQ|1|u|C|38
*
6LKQ|1|u|G|44
6LKQ|1|u|A|45
6LKQ|1|u|A|46
6LKQ|1|u|C|47
6LKQ|1|u|U|48
Current chains
- Chain u
- 5S ribosomal RNA
Nearby chains
- Chain 5
- 50S ribosomal protein L18
- Chain X
- 50S ribosomal protein L5
- Chain t
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: