IL_6LKQ_170
3D structure
- PDB id
- 6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAUGGUAG*CGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LKQ_170 not in the Motif Atlas
- Homologous match to IL_5J7L_359
- Geometric discrepancy: 0.101
- The information below is about IL_5J7L_359
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
6LKQ|1|u|C|71
6LKQ|1|u|G|72
6LKQ|1|u|A|73
6LKQ|1|u|U|74
6LKQ|1|u|G|75
6LKQ|1|u|G|76
6LKQ|1|u|U|77
6LKQ|1|u|A|78
6LKQ|1|u|G|79
*
6LKQ|1|u|C|97
6LKQ|1|u|G|98
6LKQ|1|u|A|99
6LKQ|1|u|G|100
6LKQ|1|u|A|101
6LKQ|1|u|G|102
6LKQ|1|u|U|103
6LKQ|1|u|A|104
6LKQ|1|u|G|105
Current chains
- Chain u
- 5S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L16
- Chain d
- 50S ribosomal protein L25
- Chain h
- 50S ribosomal protein L30
- Chain t
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: