IL_6LKQ_189

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LKQ_189 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0882

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6LKQ|1|t|U|1851
6LKQ|1|t|U|1852
6LKQ|1|t|A|1853
6LKQ|1|t|A|1854
6LKQ|1|t|U|1855
6LKQ|1|t|U|1856
6LKQ|1|t|G|1857
6LKQ|1|t|A|1858
6LKQ|1|t|U|1859
6LKQ|1|t|G|1860
*
6LKQ|1|t|U|1882
6LKQ|1|t|U|1883
6LKQ|1|t|G|1884
6LKQ|1|t|A|1885
6LKQ|1|t|U|1886
6LKQ|1|t|C|1887
6LKQ|1|t|G|1888
6LKQ|1|t|A|1889
6LKQ|1|t|A|1890
6LKQ|1|t|G|1891

Current chains

Chain t

23S ribosomal RNA

Nearby chains