IL_6LQM_035

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

6LQM|1|2|G|748, 6LQM|1|2|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQM_035 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1806

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6LQM|1|2|G|745
6LQM|1|2|A|746
6LQM|1|2|A|747
6LQM|1|2|G|748
6LQM|1|2|G|749
6LQM|1|2|U|750
6LQM|1|2|G|751
6LQM|1|2|G|752
*
6LQM|1|2|U|911
6LQM|1|2|G|912
6LQM|1|2|U|913
6LQM|1|2|U|914
6LQM|1|2|A|915
6LQM|1|2|C|916
6LQM|1|2|A|917
6LQM|1|2|G|918
6LQM|1|2|C|919

Current chains

Chain 2

28S rRNA

Nearby chains

Chain S

60S ribosomal protein L14

Chain b

60S ribosomal protein L18a