IL_6LQM_095

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

AACAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQM_095 not in the Motif Atlas

Homologous match to IL_8C3A_080

Geometric discrepancy: 0.1231

The information below is about IL_8C3A_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6LQM|1|2|A|2832
6LQM|1|2|A|2833
6LQM|1|2|C|2834
6LQM|1|2|A|2835
6LQM|1|2|A|2836
6LQM|1|2|U|2837
6LQM|1|2|G|2838
*
6LQM|1|2|C|3850
6LQM|1|2|U|3851
6LQM|1|2|A|3852
6LQM|1|2|U|3853

Current chains

Chain 2

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain T

60S ribosomal protein L31

Chain Y

60S ribosomal protein L17