IL_6LQP_011

3D structure

PDB id

6LQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUCG*UC

Length

6 nucleotides

Bulged bases

6LQP|1|5A|C|109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQP_011 not in the Motif Atlas

Geometric match to IL_4C7O_002

Geometric discrepancy: 0.304

The information below is about IL_4C7O_002

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

6LQP|1|5A|G|107
6LQP|1|5A|U|108
6LQP|1|5A|C|109
6LQP|1|5A|G|110
*
6LQP|1|5A|U|136
6LQP|1|5A|C|137

Current chains

Chain 5A

5' ETS

Nearby chains

Chain A5

U3 small nucleolar RNA-associated protein 5

Chain RO

Nucleolar complex protein 4