IL_6LQP_015

3D structure

PDB id

6LQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAUU*GAGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQP_015 not in the Motif Atlas

Geometric match to IL_5J7L_283

Geometric discrepancy: 0.2786

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6LQP|1|5A|A|187
6LQP|1|5A|A|188
6LQP|1|5A|U|189
6LQP|1|5A|U|190
*
6LQP|1|5A|G|207
6LQP|1|5A|A|208
6LQP|1|5A|G|209
6LQP|1|5A|U|210

Current chains

Chain 5A

5' ETS

Nearby chains

Chain 5B

Bud site selection protein 21

Chain 5D

U3 small nucleolar RNA-associated protein 11