IL_6LQP_072
3D structure
- PDB id
- 6LQP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUG*CC
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LQP_072 not in the Motif Atlas
- Geometric match to IL_4C7O_002
- Geometric discrepancy: 0.2938
- The information below is about IL_4C7O_002
- Detailed Annotation
- Single stack bend
- Broad Annotation
- Single stack bend
- Motif group
- IL_90729.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 30
Unit IDs
6LQP|1|SA|G|1051
6LQP|1|SA|U|1052
6LQP|1|SA|G|1053
*
6LQP|1|SA|C|1066
6LQP|1|SA|C|1067
Current chains
- Chain SA
- 18S pre-rRNA
Nearby chains
- Chain 5C
- U3 small nucleolar RNA-associated protein 7
- Chain 5I
- Protein SOF1
- Chain RF
- Ribosomal RNA-processing protein 7
- Chain SC
- 40S ribosomal protein S1-A
- Chain Sc
- 40S ribosomal protein S27-A
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