IL_6LQQ_015

3D structure

PDB id

6LQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUUG*CUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQQ_015 not in the Motif Atlas

Geometric match to IL_280D_001

Geometric discrepancy: 0.1191

The information below is about IL_280D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

6LQQ|1|5A|G|346
6LQQ|1|5A|U|347
6LQQ|1|5A|U|348
6LQQ|1|5A|G|349
*
6LQQ|1|5A|C|375
6LQQ|1|5A|U|376
6LQQ|1|5A|U|377
6LQQ|1|5A|C|378

Current chains

Chain 5A

5' ETS

Nearby chains

Chain 5C

U3 small nucleolar RNA-associated protein 7

Chain RC

KRR1 small subunit processome component

Chain RQ

U3 small nucleolar RNA-associated protein 14

Chain RV

Protein FAF1