IL_6LQQ_018

3D structure

PDB id

6LQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CG*CUG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQQ_018 not in the Motif Atlas

Geometric match to IL_4C7O_002

Geometric discrepancy: 0.1901

The information below is about IL_4C7O_002

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

6LQQ|1|5A|C|413
6LQQ|1|5A|G|414
*
6LQQ|1|5A|C|441
6LQQ|1|5A|U|442
6LQQ|1|5A|G|443

Current chains

Chain 5A

5' ETS

Nearby chains

Chain 5J

rRNA-processing protein FCF2

Chain RJ

Ribosome biogenesis protein BMS1