IL_6LQQ_024

3D structure

PDB id

6LQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CAG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQQ_024 not in the Motif Atlas

Geometric match to IL_5UNE_001

Geometric discrepancy: 0.2792

The information below is about IL_5UNE_001

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_44465.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

9

Unit IDs

6LQQ|1|5A|C|550
6LQQ|1|5A|A|551
6LQQ|1|5A|G|552
*
6LQQ|1|5A|C|585
6LQQ|1|5A|A|586
6LQQ|1|5A|G|587

Current chains

Chain 5A

5' ETS

Nearby chains

Chain 5J

rRNA-processing protein FCF2

Chain B6

U3 small nucleolar RNA-associated protein 6

Chain RQ

U3 small nucleolar RNA-associated protein 14