IL_6LQQ_028
3D structure
- PDB id
- 6LQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- UAUAAGC*GUGAAA
- Length
- 13 nucleotides
- Bulged bases
- 6LQQ|1|SA|U|66, 6LQQ|1|SA|A|68
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LQQ_028 not in the Motif Atlas
- Geometric match to IL_4V9F_018
- Geometric discrepancy: 0.3985
- The information below is about IL_4V9F_018
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_97631.1
- Basepair signature
- cWW-L-R-L-R-L-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
6LQQ|1|SA|U|64
6LQQ|1|SA|A|65
6LQQ|1|SA|U|66
6LQQ|1|SA|A|67
6LQQ|1|SA|A|68
6LQQ|1|SA|G|69
6LQQ|1|SA|C|70
*
6LQQ|1|SA|G|81
6LQQ|1|SA|U|82
6LQQ|1|SA|G|83
6LQQ|1|SA|A|84
6LQQ|1|SA|A|85
6LQQ|1|SA|A|86
Current chains
- Chain SA
- 18S pre-rRNA
Nearby chains
- Chain RL
- RNA cytidine acetyltransferase
- Chain RP
- U3 small nucleolar RNA-associated protein 20
- Chain SH
- 40S ribosomal protein S6-A
Coloring options: