IL_6LQQ_032
3D structure
- PDB id
- 6LQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- GUAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 6LQQ|1|SA|U|170
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LQQ_032 not in the Motif Atlas
- Homologous match to IL_4V88_394
- Geometric discrepancy: 0.1629
- The information below is about IL_4V88_394
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.3
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
6LQQ|1|SA|G|143
6LQQ|1|SA|U|144
6LQQ|1|SA|A|145
6LQQ|1|SA|U|146
6LQQ|1|SA|A|147
6LQQ|1|SA|A|148
6LQQ|1|SA|C|149
*
6LQQ|1|SA|G|165
6LQQ|1|SA|C|166
6LQQ|1|SA|U|167
6LQQ|1|SA|A|168
6LQQ|1|SA|A|169
6LQQ|1|SA|U|170
6LQQ|1|SA|A|171
6LQQ|1|SA|C|172
Current chains
- Chain SA
- 18S pre-rRNA
Nearby chains
- Chain RA
- Ribosome biogenesis protein ENP2
- Chain RP
- U3 small nucleolar RNA-associated protein 20
- Chain SH
- 40S ribosomal protein S6-A
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