IL_6LQQ_046
3D structure
- PDB id
- 6LQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- UACA*UUAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LQQ_046 not in the Motif Atlas
- Geometric match to IL_6JDV_001
- Geometric discrepancy: 0.2948
- The information below is about IL_6JDV_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_77658.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 34
Unit IDs
6LQQ|1|SA|U|517
6LQQ|1|SA|A|518
6LQQ|1|SA|C|519
6LQQ|1|SA|A|520
*
6LQQ|1|SA|U|532
6LQQ|1|SA|U|533
6LQQ|1|SA|A|534
6LQQ|1|SA|A|535
Current chains
- Chain SA
- 18S pre-rRNA
Nearby chains
- Chain RB
- U3 small nucleolar ribonucleoprotein protein LCP5
- Chain RJ
- Ribosome biogenesis protein BMS1
- Chain SK
- 40S ribosomal protein S9-A
- Chain SZ
- 40S ribosomal protein S24-A
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