IL_6LQQ_070
3D structure
- PDB id
- 6LQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CUUG*CUUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LQQ_070 not in the Motif Atlas
- Homologous match to IL_4V88_461
- Geometric discrepancy: 0.3649
- The information below is about IL_4V88_461
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_36174.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
6LQQ|1|SA|C|1495
6LQQ|1|SA|U|1496
6LQQ|1|SA|U|1497
6LQQ|1|SA|G|1498
*
6LQQ|1|SA|C|1509
6LQQ|1|SA|U|1510
6LQQ|1|SA|U|1511
6LQQ|1|SA|G|1512
Current chains
- Chain SA
- 18S pre-rRNA
Nearby chains
- Chain 5D
- U3 small nucleolar RNA-associated protein 11
- Chain 5E
- U3 small nucleolar RNA-associated protein MPP10
- Chain 5J
- rRNA-processing protein FCF2
- Chain RJ
- Ribosome biogenesis protein BMS1
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